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24, chemin de Borde Rouge –Auzeville – CS52627
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Dernière mise à jour : Mai 2018

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Laboratoire d\'écotoxicologie

Articles revues internationales

2020

 

Arambourou H, Llorente L, Moreno-Ocio I, Herrero Ó, Barata C, Fuertes I, Delorme N, Méndez-Fernández L & Planelló R (2020) Exposure to heavy metal-contaminated sediments disrupts gene expression, lipid profile, and life history traits in the midge Chironomus riparius. Water Research, 168.

Babut M, Ferrari BJD, Jame P, Assoumani A, Lestremau F, Hette-Tronquart N, Miege C & Perceval O (2020) Monitoring priority substances in biota under the Water Framework Directive: how effective is a tiered approach based on caged invertebrates? A proof-of-concept study targeting PFOS in French rivers. Environmental Sciences Europe, 32(1).

Babut M, Marchand P, Venisseau A, Veyrand B & Ferrari BJD Legacy and alternative halogenated flame retardants in Lake Geneva fish. Environmental Science and Pollution Research.

Capela R, Garric J, Castro LFC & Santos MM (2020) Embryo bioassays with aquatic animals for toxicity testing and hazard assessment of emerging pollutants: A review. Science of the Total Environment, 705.

Capela R, Garric J, Costa Castro LF & Santos MM (2020) Data collection on the use of embryo bioassays with aquatic animals for toxicity testing and hazard assessment of emerging pollutants. Data in Brief, 29.

Chaumot A, Coulaud R, Adam O, Quéau H, Lopes C & Geffard O (2020) In Situ Reproductive Bioassay with Caged Gammarus fossarum (Crustacea): Part 1—Gauging the Confounding Influence of Temperature and Water Hardness. Environmental Toxicology and Chemistry, 39(3):667-677.

Cogne Y, Gouveia D, Chaumot A, Degli-Esposti D, Geffard O, Pible O, Almunia C & Armengaud J (2020) Proteogenomics-Guided Evaluation of RNA-Seq Assembly and Protein Database Construction for Emergent Model Organisms. Proteomics, 20(10).

Cribiu P, Devaux A, Garnero L, Abbaci K, Bastide T, Delorme N, Quéau H, Degli Esposti D, Ravanat J-L, Geffard O, Bony S & Chaumot A (2020) A “Population Dynamics” Perspective on the Delayed Life-History Effects of Environmental Contaminations: An Illustration with a Preliminary Study of Cadmium Transgenerational Effects over Three Generations in the Crustacean Gammarus. International Journal of Molecular Sciences, 21(13).

Faugere J, Gouveia D, Ayciriex S, Chaumot A, Almunia C, François A, Armengaud J, Lemoine J, Geffard O, Degli-Esposti D & Salvador A (2020) High-multiplexed monitoring of protein biomarkers in the sentinel Gammarus fossarum by targeted scout-MRM assay, a new vision for ecotoxicoproteomics. Journal of Proteomics, 226:103901.

Fu T, Oetjen J, Chapelle M, Verdu A, Szesny M, Chaumot A, Degli-Esposti D, Geffard O, Clément Y, Salvador A & Ayciriex S (2020) In situ isobaric lipid mapping by MALDI-ion mobility separation-mass spectrometry imaging. Journal of mass spectrometry : JMS, 55(9):e4531.

Gouveia D, Pible O, Culotta K, Jouffret V, Geffard O, Chaumot A, Degli-Esposti D & Armengaud J (2020) Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host. npj Biofilms and Microbiomes, 6(1).

Heise S, Babut M, Casado C, Feiler U, Ferrari BJD & Marziali L Ecotoxicological testing of sediments and dredged material: an overlooked opportunity? Journal of Soils and Sediments.

Lopes C, Chaumot A, Xuereb B, Coulaud R, Jubeaux G, Quéau H, François A & Geffard O (2020) In Situ Reproductive Bioassay with Caged Gammarus fossarum (Crustacea): Part 2—Evaluating the Relevance of Using a Molt Cycle Temperature-Dependent Model as a Reference to Assess Toxicity in Freshwater Monitoring. Environmental Toxicology and Chemistry, 39(3):678-691.

Sarkis N, Geffard O, Souchon Y, Chandesris A, Férréol M, Valette L, Alric B, François A, Piffady J, Chaumot A & Villeneuve B (2020) How to quantify the links between bioavailable contamination in watercourses and pressures of anthropogenic land cover, contamination sources and hydromorphology at multiple scales? Science of the Total Environment, 735.

Valsecchi S, Babut M, Mazzoni M, Pascariello S, Ferrario C, De Felice B, Bettinetti R, Veyrand B, Marchand P & Polesello S Perfluoroalkyl Substances (PFASs) in Fish from European Lakes: Current Contamination Status, Sources, and Perspectives for Monitoring. Environmental Toxicology and Chemistry.

Vidal A, Babut M, Garric J & Beaudouin R (2019) Elucidating the fate of perfluorooctanoate sulfonate using a rainbow trout (Oncorhynchus mykiss) physiologically-based toxicokinetic model. Science of the Total Environment, 691:1297-1309.

Vidal A, Babut M, Garric J & Beaudouin R (2020) Temperature effect on perfluorooctane sulfonate toxicokinetics in rainbow trout (Oncorhynchus mykiss): Exploration via a physiologically based toxicokinetic model. Aquatic Toxicology, 225.

Wattier R, Mamos T, Copilas-Ciocianu D, Jelic M, Ollivier A, Chaumot A, Danger M, Felten V, Piscart C, Zganec K, Rewicz T, Wysocka A, Rigaud T & Grabowski M (2020) Continental-scale patterns of hyper-cryptic diversity within the freshwater model taxon Gammarus fossarum (Crustacea, Amphipoda). Scientific Reports, 10(1):16. accès

2019

 

Alric B, Geffard O, Chandesris A, Ferréol M, François A, Perceval O, Piffady J, Villeneuve B & Chaumot A (2019) Multisubstance Indicators Based on Caged Gammarus Bioaccumulation Reveal the Influence of Chemical Contamination on Stream Macroinvertebrate Abundances across France. Environmental Science and Technology, 53(10):5906-5915.

Arambourou H, Planelló R, Llorente L, Fuertes I, Barata C, Delorme N, Noury P, Herrero Ó, Villeneuve A & Bonnineau C (2019) Chironomus riparius exposure to field-collected contaminated sediments: From subcellular effect to whole-organism response. Science of the Total Environment, 671:874-882.

Arambourou H, Vulliet E, Daniele G, Noury P, Delorme N, Abbaci K, Forcellini M, Tutundjian R & Barata C (2019) Comparison in the response of three European Gammarid species exposed to the growth regulator insecticide fenoxycarb. Environmental Science and Pollution Research.

Babut M, Mourier B, Desmet M, Simonnet-Laprade C, Labadie P, Budzinski H, De Alencastro LF, Tu TA, Strady E & Gratiot N (2019) Where has the pollution gone? A survey of organic contaminants in Ho Chi Minh city / Saigon River (Vietnam) bed sediments. Chemosphere, 217:261-269.

Bonnefoy C, Fildier A, Buleté A, Bordes C, Garric J & Vulliet E (2019) Untargeted analysis of nanoLC-HRMS data by ANOVA-PCA to highlight metabolites in Gammarus fossarum after in vivo exposure to pharmaceuticals. Talanta, 202:221-229.

Cogne Y, Almunia C, Gouveia D, Pible O, François A, Degli-Esposti D, Geffard O, Armengaud J & Chaumot A (2019) Comparative proteomics in the wild: Accounting for intrapopulation variability improves describing proteome response in a Gammarus pulex field population exposed to cadmium. Aquatic Toxicology, 214.

Cogne Y, Degli-Esposti D, Pible O, Gouveia D, François A, Bouchez O, Eché C, Ford A, Geffard O, Armengaud J, Chaumot A & Almunia C (2019) De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups. Scientific data, 6(1):184.

Degli Esposti D, Almunia C, Guery MA, Koenig N, Armengaud J, Chaumot A & Geffard O (2019) Co-expression network analysis identifies gonad- and embryo-associated protein modules in the sentinel species Gammarus fossarum. Scientific Reports, 9(1).

Erraud A, Bonnard M, Geffard O, Chaumot A, Duflot A, Geffard A, Forget-Leray J & Xuereb B (2019) Assessment of sperm DNA integrity within the Palaemon longirostris (H. Milne-Edwards, 1837) population of the Seine estuary. Environmental Pollution, 245:485-493.

Erraud A, Bonnard M, Geffard O, Coulaud R, Poret A, Duflot A, Forget-Leray J, Geffard A & Xuereb B (2019) Signification of DNA integrity in sperm of Palaemon serratus (Pennant 1777): Kinetic responses and reproduction impairment. Marine Environmental Research, 144:130-140.

Gouveia D, Almunia C, Cogne Y, Pible O, Degli-Esposti D, Salvador A, Cristobal S, Sheehan D, Chaumot A, Geffard O & Armengaud J (2019) Ecotoxicoproteomics: A decade of progress in our understanding of anthropogenic impact on the environment. Journal of Proteomics, 198:66-77.

Kidd KA, Burkhard LP, Babut M, Borgå K, Muir DCG, Perceval O, Ruedel H, Woodburn K & Embry MR (2019) Practical advice for selecting or determining trophic magnification factors for application under the European Union Water Framework Directive. Integrated Environmental Assessment and Management, 15(2):266-277.

Labadie P, Blasi C, Le Menach K, Geneste E, Babut M, Perceval O & Budzinski H (2019) Evidence for the widespread occurrence of short- and medium-chain chlorinated paraffins in fish collected from the Rhône River basin (France). Chemosphere, 223:232-239.

Milinkovitch T, Geffard O, Geffard A, Mouneyrac C, Chaumot A, Xuereb B, Fisson C, Minier C, Auffret M, Perceval O, Egea E & Sanchez W (2019) Biomarkers as tools for monitoring within the Water Framework Directive context: concept, opinions and advancement of expertise. Environmental Science and Pollution Research, 26(32):32759-32763.

Mourier B, Labadie P, Desmet M, Grosbois C, Raux J, Debret M, Copard Y, Pardon P, Budzinski H & Babut M (2019) Combined spatial and retrospective analysis of fluoroalkyl chemicals in fluvial sediments reveal changes in levels and patterns over the last 40 years. Environmental Pollution, 253:1117-1125.

Munoz G, Budzinski H, Babut M, Lobry J, Selleslagh J, Tapie N & Labadie P (2019) Temporal variations of perfluoroalkyl substances partitioning between surface water, suspended sediment, and biota in a macrotidal estuary. Chemosphere, 233:319-326.

Ratier A, Lopes C, Labadie P, Budzinski H, Delorme N, Quéau H, Peluhet L, Geffard O & Babut M (2019) A Bayesian framework for estimating parameters of a generic toxicokinetic model for the bioaccumulation of organic chemicals by benthic invertebrates: Proof of concept with PCB153 and two freshwater species. Ecotoxicology and Environmental Safety, 180:33-42.

Simmonet-Laprade C, Budzinski H, Babut M, Le Menach K, Munoz G, Lauzent M, Ferrari BJD & Labadie P (2019) Investigation of the spatial variability of poly- and perfluoroalkyl substance trophic magnification in selected riverine ecosystems. Science of the Total Environment, 686:393-401.

Vidal A, Babut M, Garric J & Beaudouin R (2019) Elucidating the fate of perfluorooctanoate sulfonate using a rainbow trout (Oncorhynchus mykiss) physiologically-based toxicokinetic model. Science of the Total Environment, 691:1297-1309.

Vidal A, Lafay F, Daniele G, Vulliet E, Rochard E, Garric J & Babut M (2019) Does water temperature influence the distribution and elimination of perfluorinated substances in rainbow trout (Oncorhynchus mykiss)? Environmental Science and Pollution Research, 26(16):16355-16365.

Vigneron A, Geffard O, Quéau H, François A & Chaumot A (2019) Nongenetic inheritance of increased Cd tolerance in a field Gammarus fossarum population: Parental exposure steers offspring sensitivity. Aquatic Toxicology, 209:91-98.

 

2018

 

Abdel Malak I, Cariou R, Vénisseau A, Dervilly-Pinel G, Jaber F, Babut M & Le Bizec B (2018) Occurrence of Dechlorane Plus and related compounds in catfish (Silurus spp.) from rivers in France. Chemosphere, 207:413-420.

Arambourou H, Fuertes I, Vulliet E, Daniele G, Noury P, Delorme N, Abbaci K & Barata C (2018) Fenoxycarb exposure disrupted the reproductive success of the amphipod Gammarus fossarum with limited effects on the lipid profile. PLoS ONE, 13(4).

Barjhoux I, Fechner LC, Lebrun JD, Anzil A, Ayrault S, Budzinski H, Cachot J, Charron L, Chaumot A, Clérandeau C, Dedourge-Geffard O, Faburé J, François A, Geffard O, George I, Labadie P, Lévi Y, Munoz G, Noury P, Oziol L, Quéau H, Servais P, Uher E, Urien N & Geffard A (2018) Application of a multidisciplinary and integrative weight-of-evidence approach to a 1-year monitoring survey of the Seine River. Environmental Science and Pollution Research, 25(24):23404-23429.

Baudrimont M, Andrei J, Mornet S, Gonzalez P, Mesmer-Dudons N, Gourves PY, Jaffal A, Dedourge-Geffard O, Geffard A, Geffard O, Garric J & Feurtet-Mazel A (2018) Trophic transfer and effects of gold nanoparticles (AuNPs) in Gammarus fossarum from contaminated periphytic biofilm. Environmental Science and Pollution Research, 25(12):11181-11191.

Berlioz-Barbier A, Buleté A, Fildier A, Garric J & Vulliet E (2018) Non-targeted investigation of benthic invertebrates (Chironomus riparius) exposed to wastewater treatment plant effluents using nanoliquid chromatography coupled to high-resolution mass spectrometry. Chemosphere, 196:347-353.

Bertin D, Ferrari BJD, Labadie P, Sapin A, Da Silva Avelar D, Beaudouin R, Péry A, Garric J, Budzinski H & Babut M (2018) Refining uptake and depuration constants for fluoroalkyl chemicals in Chironomus riparius larvae on the basis of experimental results and modelling. Ecotoxicology and Environmental Safety, 149:284-290.

Boisseaux P, Noury P, Delorme N, Perrier L, Thomas-Guyon H & Garric J (2018) Immunocompetence analysis of the aquatic snail Lymnaea stagnalis exposed to urban wastewaters. Environmental Science and Pollution Research, 25(17):16720-16728.

Cribiu P, Chaumot A, Geffard O, Ravanat JL, Bastide T, Delorme N, Quéau H, Caillat S, Devaux A & Bony S (2018) Natural variability and modulation by environmental stressors of global genomic cytosine methylation levels in a freshwater crustacean, Gammarus fossarum. Aquatic Toxicology, 205:11-18.

Erraud A, Bonnard M, Chaumot A, Geffard O, Duflot A, Forget-Leray J, Le Foll F, Geffard A & Xuereb B (2018) Use of sperm DNA integrity as a marker for exposure to contamination in Palaemon serratus (Pennant 1777): Intrinsic variability, baseline level and in situ deployment. Water Research, 132:124-134.

Gouveia D, Bonneton F, Almunia C, Armengaud J, Quéau H, Degli-Esposti D, Geffard O & Chaumot A (2018) Identification, expression, and endocrine-disruption of three ecdysone-responsive genes in the sentinel species Gammarus fossarum. Scientific Reports, 8(1).

Mazzitelli JY, Budzinski H, Cachot J, Geffard O, Marty P, Chiffre A, François A, Bonnafe E & Geret F (2018) Evaluation of psychiatric hospital wastewater toxicity: what is its impact on aquatic organisms? Environmental Science and Pollution Research, 25(26):26090-26102.

Rollin M, Coulaud R, Danger M, Sohm B, Flayac J, Bec A, Chaumot A, Geffard O & Felten V (2018) Additive effect of calcium depletion and low resource quality on Gammarus fossarum (Crustacea, Amphipoda) life history traits. Environmental Science and Pollution Research, 25(12):11264-11280.

Rossi F, Pesce S, Mallet C, Margoum C, Chaumot A, Masson M & Artigas J (2018) Interactive effects of pesticides and nutrients on microbial communities responsible of litter decomposition in streams. Frontiers in Microbiology, 9(OCT).

Trapp J, Gouveia D, Almunia C, Pible O, Esposti DD, Gaillard JC, Chaumot A, Geffard O & Armengaud J (2018) Digging deeper into the pyriproxyfen-response of the amphipod Gammarus fossarum with a next-generation ultra-high-field orbitrap analyser: New perspectives for environmental toxicoproteomics. Frontiers in Environmental Science, 6(JUN).

Yassine M, Fuster L, Dévier MH, Geneste E, Pardon P, Grélard A, Dufourc E, Al Iskandarani M, Aït-Aïssa S, Garric J, Budzinski H, Mazellier P & Trivella AS (2018) Photodegradation of novel oral anticoagulants under sunlight irradiation in aqueous matrices. Chemosphere, 193:329-336.

 

2017

 

Arambourou H, Chaumot A, Vulliet E, Daniele G, Delorme N, Abbaci K & Debat V (2017) Phenotypic defects in newborn Gammarus fossarum (Amphipoda) following embryonic exposure to fenoxycarb. Ecotoxicology and Environmental Safety,144:193-199.

Arambourou H, Decamps A, Quéau H, Dabrin A, Neuzeret D & Chaumot A (2017) Use of Gammarus fossarum (Amphipoda) embryo for toxicity testing: A case study with cadmium. Environmental Toxicology and Chemistry, 36(9):2436-2443.

Babut M, Labadie P, Simonnet-Laprade C, Munoz G, Roger MC, Ferrari BJD, Budzinski H & Sivade E (2017) Per- and poly-fluoroalkyl compounds in freshwater fish from the Rhône River: Influence of fish size, diet, prey contamination and biotransformation. Science of the Total Environment, 605-606:38-47.

Barata C, Campos B, Rivetti C, LeBlanc GA, Eytcheson S, McKnight S, Tobor-Kaplon M, de Vries Buitenweg S, Choi S, Choi J, Sarapultseva EI, Coutellec MA, Coke M, Pandard P, Chaumot A, Quéau H, Delorme N, Geffard O, Martínez-Jerónimo F, Watanabe H, Tatarazako N, Lopes I, Pestana JLT, Soares AMVM, Pereira CM & De Schamphelaere K (2017) Validation of a two-generational reproduction test in Daphnia magna: An interlaboratory exercise. Science of the Total Environment, 579:1073-1083.

Boisseaux P, Noury P, Thomas H & Garric J (2017) Immune responses in the aquatic gastropod Lymnaea stagnalis under short-term exposure to pharmaceuticals of concern for immune systems: Diclofenac, cyclophosphamide and cyclosporine A. Ecotoxicology and Environmental Safety, 139:358-366.

Charnot A, Gouveia D, Armengaud J, Almunia C, Chaumot A, Lemoine J, Geffard O & Salvador A (2017) Multiplexed assay for protein quantitation in the invertebrate Gammarus fossarum by liquid chromatography coupled to tandem mass spectrometry. Analytical and Bioanalytical Chemistry, 409(16):3969-3991.

Ciliberti A, Chaumot A, Recoura-Massaquant R, Chandesris A, François A, Coquery M, Ferréol M & Geffard O (2017) Caged Gammarus as biomonitors identifying thresholds of toxic metal bioavailability that affect gammarid densities at the French national scale. Water Research, 118:131-140.

Dayras P, Charmantier G, Chaumot A, Vigneron A, Coquery M, Quéau H, Artells E, Lignot JH, Geffard O & Issartel J (2017) Osmoregulatory responses to cadmium in reference and historically metal contaminated Gammarus fossarum (Crustacea, Amphipoda) populations. Chemosphere, 180:412-422.

Garcia-Galan MJ, Sordet M, Buleté A, Garric J & Vulliet E (2017) Evaluation of the influence of surfactants in the bioaccumulation kinetics of sulfamethoxazole and oxazepam in benthic invertebrates. Science of the Total Environment, 592:554-564.

Gouveia D, Chaumot A, Charnot A, Almunia C, François A, Navarro L, Armengaud J, Salvador A & Geffard O (2017) Ecotoxico-Proteomics for Aquatic Environmental Monitoring: First in Situ Application of a New Proteomics-Based Multibiomarker Assay Using Caged Amphipods. Environmental Science and Technology, 51(22):13417-13426.

Gouveia D, Chaumot A, Charnot A, Queau H, Armengaud J, Almunia C, Salvador A & Geffard O (2017) Assessing the relevance of a multiplexed methodology for proteomic biomarker measurement in the invertebrate species Gammarus fossarum: A physiological and ecotoxicological study. Aquatic Toxicology, 190:199-209.

Munoz G, Budzinski H, Babut M, Drouineau H, Lauzent M, Menach KL, Lobry J, Selleslagh J, Simonnet-Laprade C & Labadie P (2017) Evidence for the Trophic Transfer of Perfluoroalkylated Substances in a Temperate Macrotidal Estuary. Environmental Science and Technology, 51(15):8450-8459.

Prud'homme SM, Chaumot A, Cassar E, David JP & Reynaud S (2017) Impact of micropollutants on the life-history traits of the mosquito Aedes aegypti: On the relevance of transgenerational studies. Environmental Pollution, 220:242-254.

Urien N, Farfarana A, Uher E, Fechner LC, Chaumot A, Geffard O & Lebrun JD (2017) Comparison in waterborne Cu, Ni and Pb bioaccumulation kinetics between different gammarid species and populations: Natural variability and influence of metal exposure history. Aquatic Toxicology, 193:245-255.

Wigh A, Geffard O, Abbaci K, Francois A, Noury P, Bergé A, Vulliet E, Domenjoud B, Gonzalez-Ospina A, Bony S & Devaux A (2017) Gammarus fossarum as a sensitive tool to reveal residual toxicity of treated wastewater effluents. Science of the Total Environment, 584-585:1012-1021.

 

2016

 

Babut M, Ferrari B, Durand C, Devin S, Colas F, Garric J, Charlatchka R & Ferard JF (2016) Towards a tiered framework for an ecotoxicological hazard assessment of fluvial sediments-presentation and early tests. Houille Blanche, 2016-August(4):85-100.

Beauvais-Flück R, Chaumot A, Gimbert F, Quéau H, Geffard O, Slaveykova VI & Cosio C (2016) Role of cellular compartmentalization in the trophic transfer of mercury species in a freshwater plant-crustacean food chain. Journal of Hazardous Materials, 320:401-407.

Bertin D, Labadie P, Ferrari BJD, Sapin A, Garric J, Geffard O, Budzinski H & Babut M (2016) Potential exposure routes and accumulation kinetics for poly- and perfluorinated alkyl compounds for a freshwater amphipod: Gammarus spp. (Crustacea). Chemosphere, 155:380-387.

Bigot-Clivot A, Palos Ladeiro M, Lepoutre A, Bastien F, Bonnard I, Dubey JP, Villena I, Aubert D, Geffard O, François A & Geffard A (2016) Bioaccumulation of Toxoplasma and Cryptosporidium by the freshwater crustacean Gammarus fossarum: Involvement in biomonitoring surveys and trophic transfer. Ecotoxicology and Environmental Safety, 133:188-194.

Boisseaux P, Delignette-Muller ML, Abbaci K, Thomas H & Garric J (2016) Analysis of hemocytes in Lymnaea stagnalis: Characterization and effects of repeated hemolymph collections. Fish and Shellfish Immunology, 57:116-126.

Boisseaux P, Noury P, Delignette-Muller ML, Thomas H & Garric J (2016) Recommendations for the analysis of hemocyte-related immunocompetent oxidative activity in the freshwater snail Lymnaea stagnalis. Journal of Xenobiotics, 6(2 2Special Issue):25-27.

Pesce S, Zoghlami O, Margoum C, Artigas J, Chaumot A & Foulquier A (2016) Combined effects of drought and the fungicide tebuconazole on aquatic leaf litter decomposition. Aquatic Toxicology, 173:120-131.

Prygiel E, Billon G, François A, Dumoulin D, Chaumot A, Geffard O, Criquet J & Prygiel J (2016) Active biomonitoring for assessing effects of metal polluted sediment resuspension on gammarid amphipods during fluvial traffic. Environmental Pollution, 218:129-139.

Sordet M, Berlioz-Barbier A, Buleté A, Garric J & Vulliet E (2016) Quantification of emerging micropollutants in an amphipod crustacean by nanoliquid chromatography coupled to mass spectrometry using multiple reaction monitoring cubed mode. Journal of Chromatography A, 1456:217-225.

Trapp J, Almunia C, Gaillard JC, Pible O, Chaumot A, Geffard O & Armengaud J (2016) Proteogenomic insights into the core-proteome of female reproductive tissues from crustacean amphipods. Journal of Proteomics, 135:51-61.

Trapp J, Armengaud J, Gaillard JC, Pible O, Chaumot A & Geffard O (2016) High-throughput proteome dynamics for discovery of key proteins in sentinel species: Unsuspected vitellogenins diversity in the crustacean Gammarus fossarum. Journal of Proteomics, 146:207-214.

Urien N, Lebrun JD, Fechner LC, Uher E, François A, Quéau H, Coquery M, Chaumot A & Geffard O (2016) Environmental relevance of laboratory-derived kinetic models to predict trace metal bioaccumulation in gammarids: Field experimentation at a large spatial scale (France). Water Research, 95:330-339.

Vigneron A, Geffard O, Quéau H & Chaumot A (2016) Mothers and not genes determine inherited differences in cadmium sensitivities within unexposed populations of the freshwater crustacean Gammarus fossarum. Evolutionary Applications, 9(2):355-366.

 

2015

 

Berlioz-Barbier A, Baudot R, Wiest L, Gust M, Garric J, Cren-Olivé C & Buleté A (2015) MicroQuEChERS-nanoliquid chromatography-nanospray-tandem mass spectrometry for the detection and quantification of trace pharmaceuticals in benthic invertebrates. Talanta, 132:796-802.

Charron L, Geffard O, Chaumot A, Coulaud R, Jaffal A, Gaillet V, Dedourge-Geffard O & Geffard A (2015) Consequences of lower food intake on the digestive enzymes activities, the energy reserves and the reproductive outcome in Gammarus fossarum. PLoS ONE, 10(4).

Coulaud R, Geffard O, Vigneron A, Quéau H, François A & Chaumot A (2015) Linking feeding inhibition with reproductive impairment in Gammarus confirms the ecological relevance of feeding assays in environmental monitoring. Environmental Toxicology and Chemistry, 34(5):1031-1038.

Lebrun JD, Geffard O, Urien N, François A, Uher E & Fechner LC (2015) Seasonal variability and inter-species comparison of metal bioaccumulation in caged gammarids under urban diffuse contamination gradient: Implications for biomonitoring investigations. Science of the Total Environment, 511:501-508.

Trapp J, Armengaud J, Pible O, Gaillard JC, Abbaci K, Habtoul Y, Chaumot A & Geffard O (2015) Proteomic investigation of male Gammarus fossarum, a freshwater crustacean, in response to endocrine disruptors. Journal of Proteome Research, 14(1):292-303.

Urien N, Uher E, Billoir E, Geffard O, Fechner LC & Lebrun JD (2015) A biodynamic model predicting waterborne lead bioaccumulation in Gammarus pulex: Influence of water chemistry and in situ validation. Environmental Pollution, 203:22-30.

Van Metre PC, Babut M, Mourier B, Mahler BJ, Roux G & Desmet M (2015) Declining Dioxin Concentrations in the Rhone River Basin, France, Attest to the Effectiveness of Emissions Controls. Environmental Science and Technology, 49(21):12729-12730.

Vigneron A, Geffard O, Coquery M, François A, Quéau H & Chaumot A (2015) Evolution of cadmium tolerance and associated costs in a Gammarus fossarum population inhabiting a low-level contaminated stream. Ecotoxicology, 24(6):1239-1249.

 

2014

 

Armengaud J, Trapp J, Pible O, Geffard O, Chaumot A & Hartmann EM (2014) Non-model organisms, a species endangered by proteogenomics. Journal of Proteomics, 105:5-18.

Berlioz-Barbier A, Buleté A, Faburé J, Garric J, Cren-Olivé C & Vulliet E (2014) Multi-residue analysis of emerging pollutants in benthic invertebrates by modified micro-quick-easy-cheap-efficient-rugged-safe extraction and nanoliquid chromatography-nanospray-tandem mass spectrometry analysis. Journal of Chromatography A, 1367:16-32.

Bertin D, Ferrari BJD, Labadie P, Sapin A, Garric J, Budzinski H, Houde M & Babut M (2014) Bioaccumulation of perfluoroalkyl compounds in midge (Chironomus riparius) larvae exposed to sediment. Environmental Pollution, 189:27-34.

Charron L, Geffard O, Chaumot A, Coulaud R, Jaffal A, Gaillet V, Dedourge-Geffard O & Geffard A (2014) Influence of molting and starvation on digestive enzyme activities and energy storage in Gammarus fossarum. PLoS ONE, 9(4).

Coulaud R, Geffard O, Coquillat A, Quéau H, Charles S & Chaumot A (2014) Ecological modeling for the extrapolation of ecotoxicological effects measured during in situ assays in Gammarus. Environmental Science and Technology, 48(11):6428-6436.

Gust M, Gagné F, Berlioz-Barbier A, Besse JP, Buronfosse T, Tournier M, Tutundjian R, Garric J & Cren-Olivé C (2014) Caged mudsnail Potamopyrgus antipodarum (Gray) as an integrated field biomonitoring tool: Exposure assessment and reprotoxic effects of water column contamination. Water Research, 54:222-236.

Mourier B, Desmet M, Van Metre PC, Mahler BJ, Perrodin Y, Roux G, Bedell JP, Lefèvre I & Babut M (2014) Historical records, sources, and spatial trends of PCBs along the RhÔne River (France). Science of the Total Environment, 476-477:568-576.

Trapp J, Armengaud J, Salvador A, Chaumot A & Geffard O (2014) Next-generation proteomics: Toward customized biomarkers for environmental biomonitoring. Environmental Science and Technology, 48(23):13560-13572.

Trapp J, Geffard O, Imbert G, Gaillard JC, Davin AH, Chaumot A & Armengaud J (2014) Proteogenomics of gammarus fossarum to document the reproductive system of amphipods. Molecular and Cellular Proteomics, 13(12):3612-3625.

 

2013

 

Babut M, Arts GH, Barra Caracciolo A, Carluer N, Domange N, Friberg N, Gouy V, Grung M, Lagadic L, Martin-Laurent F, Mazzella N, Pesce S, Real B, Reichenberger S, Roex EWM, Romijn K, Röttele M, Stenrød M, Tournebize J, Vernier F & Vindimian E (2013) Pesticide risk assessment and management in a globally changing world-report from a European interdisciplinary workshop. Environmental Science and Pollution Research, 20(11):8298-8312.

Besse JP, Coquery M, Lopes C, Chaumot A, Budzinski H, Labadie P & Geffard O (2013) Caged Gammarus fossarum (Crustacea) as a robust tool for the characterization of bioavailable contamination levels in continental waters: Towards the determination of threshold values. Water Research, 47(2):650-660.

Charron L, Geffard O, Chaumot A, Coulaud R, Queau H, Geffard A & Dedourge-Geffard O (2013) Effect of water quality and confounding factors on digestive enzyme activities in Gammarus fossarum. Environmental Science and Pollution Research, 20(12):9044-9056.

Coulaud R, Mouthon J, Quéau H, Charles S & Chaumot A (2013) Life-history phenology strongly influences population vulnerability to toxicants: A case study with the mudsnail Potamopyrgus antipodarum. Environmental Toxicology and Chemistry, 32(8):1727-1736.

Dedourge-Geffard O, Charron L, Hofbauer C, Gaillet V, Palais F, Lacaze E, Geffard A & Geffard O (2013) Temporal patterns of digestive enzyme activities and feeding rate in gammarids (Gammarus fossarum) exposed to inland polluted waters. Ecotoxicology and Environmental Safety, 97:139-146.

Fouqueray M, Noury P, Dherret L, Chaurand P, Abbaci K, Labille J, Rose J & Garric J (2013) Exposure of juvenile Danio rerio to aged TiO<inf>2</inf> nanomaterial from sunscreen. Environmental Science and Pollution Research, 20(5):3340-3350.

Gust M, Fortier M, Garric J, Fournier M & Gagné F (2013) Effects of short-term exposure to environmentally relevant concentrations of different pharmaceutical mixtures on the immune response of the pond snail Lymnaea stagnalis. Science of the Total Environment, 445-446:210-218.

Gust M, Fortier M, Garric J, Fournier M & Gagné F (2013) Immunotoxicity of surface waters contaminated by municipal effluents to the snail Lymnaea stagnalis. Aquatic Toxicology, 126:393-403.

Lecomte V, Noury P, Tutundjian R, Buronfosse T, Garric J & Gust M (2013) Organic solvents impair life-traits and biomarkers in the New Zealand mudsnail Potamopyrgus antipodarum (Gray) at concentrations below OECD recommendations. Aquatic Toxicology, 140-141:196-203.

Rossi L, Chèvre N, Fankhauser R, Margot J, Curdy R, Babut M & Barry DA (2013) Sediment contamination assessment in urban areas based on total suspended solids. Water Research, 47(1):339-350.

 

2012

 

Artigas J, Arts G, Babut M, Caracciolo AB, Charles S, Chaumot A, Combourieu B, Dahllöf I, Despréaux D, Ferrari B, Friberg N, Garric J, Geffard O, Gourlay-Francé C, Hein M, Hjorth M, Krauss M, De Lange HJ, Lahr J, Lehtonen KK, Lettieri T, Liess M, Lofts S, Mayer P, Morin S, Paschke A, Svendsen C, Usseglio-Polatera P, Van Den Brink N, Vindimian E & Williams R (2012) Towards a renewed research agenda in ecotoxicology. Environmental Pollution, 160(1):201-206.

Babut M, Lopes C, Pradelle S, Persat H & Badot PM (2012) BSAFs for freshwater fish and derivation of a sediment quality guideline for PCBs in the Rhone basin, France. Journal of Soils and Sediments, 12(2):241-251.

Babut M, Mathieu A, Pradelle S, Marchand P, Le Bizec B & Perceval O (2012) Nationwide PCB congener pattern analysis in freshwater fish samples in France. Knowledge and Management of Aquatic Ecosystems (407).

Besse JP, Geffard O & Coquery M (2012) Relevance and applicability of active biomonitoring in continental waters under the Water Framework Directive. TrAC - Trends in Analytical Chemistry, 36:113-127.

Besse JP, Latour JF & Garric J (2012) Anticancer drugs in surface waters. What can we say about the occurrence and environmental significance of cytotoxic, cytostatic and endocrine therapy drugs? Environment International, 39(1):73-86.

Chaumot A, Da Lage JL, Maestro O, Martin D, Iwema T, Brunet F, Belles X, Laudet V & Bonneton F (2012) Molecular adaptation and resilience of the insect's nuclear receptor USP. BMC Evolutionary Biology, 12(1).

Dabrin A, Durand CL, Garric J, Geffard O, Ferrari BJD & Coquery M (2012) Coupling geochemical and biological approaches to assess the availability of cadmium in freshwater sediment. Science of the Total Environment, 424:308-315.

Desmet M, Mourier B, Mahler BJ, Van Metre PC, Roux G, Persat H, Lefèvre I, Peretti A, Chapron E, Simonneau A, Miège C & Babut M (2012) Spatial and temporal trends in PCBs in sediment along the lower RhÔne River, France. Science of the Total Environment, 433:189-197.

Fouqueray M, Dufils B, Vollat B, Chaurand P, Botta C, Abacci K, Labille J, Rose J & Garric J (2012) Effects of aged TiO2 nanomaterial from sunscreen on Daphnia magna exposed by dietary route. Environmental Pollution, 163:55-61.

Jubeaux G, Audouard-Combe F, Simon R, Tutundjian R, Salvador A, Geffard O & Chaumot A (2012) Vitellogenin-like proteins among invertebrate species diversity: Potential of proteomic mass spectrometry for biomarker development. Environmental Science and Technology, 46(11):6315-6323.

Jubeaux G, Simon R, Salvador A, Lopes C, Lacaze E, Quéau H, Chaumot A & Geffard O (2012) Vitellogenin-like protein measurement in caged Gammarus fossarum males as a biomarker of endocrine disruptor exposure: Inconclusive experience. Aquatic Toxicology, 122-123:9-18.

Jubeaux G, Simon R, Salvador A, Quéau H, Chaumot A & Geffard O (2012) Vitellogenin-like proteins in the freshwater amphipod Gammarus fossarum (Koch, 1835): Functional characterization throughout reproductive process, potential for use as an indicator of oocyte quality and endocrine disruption biomarker in males. Aquatic Toxicology, 112-113:72-82.

Lopes C, Persat H & Babut M (2012) Transfer of PCBs from bottom sediment to freshwater river fish: A food-web modelling approach in the RhOne River (France) in support of sediment management. Ecotoxicology and Environmental Safety, 81:17-26.

Mai H, Cachot J, Brune J, Geffard O, Belles A, Budzinski H & Morin B (2012) Embryotoxic and genotoxic effects of heavy metals and pesticides on early life stages of Pacific oyster (Crassostrea gigas). Marine Pollution Bulletin, 64(12):2663-2670.

Miège C, Peretti A, Labadie P, Budzinski H, Le Bizec B, Vorkamp K, Tronczyński J, Persat H, Coquery M & Babut M (2012) Occurrence of priority and emerging organic compounds in fishes from the Rhone River (France). Analytical and Bioanalytical Chemistry, 404(9):2721-2735.

Palais F, Dedourge-Geffard O, Beaudon A, Pain-Devin S, Trapp J, Geffard O, Noury P, Gourlay-Francé C, Uher E, Mouneyrac C, Biagianti-Risbourg S & Geffard A (2012) One-year monitoring of core biomarker and digestive enzyme responses in transplanted zebra mussels (Dreissena polymorpha). Ecotoxicology, 21(3):888-905.

 

2011

 

Coulaud R, Geffard O, Xuereb B, Lacaze E, Quéau H, Garric J, Charles S & Chaumot A (2011) In situ feeding assay with Gammarus fossarum (Crustacea): Modelling the influence of confounding factors to improve water quality biomonitoring. Water Research, 45(19):6417-6429.

Gust M, Buronfosse T, André C, Mons R, Gagné F & Garric J (2011) Is exposure temperature a confounding factor for the assessment of reproductive parameters of New Zealand mudsnails Potamopyrgus antipodarum (Gray)? Aquatic Toxicology, 101(2):396-404.

Gust M, Buronfosse T, Geffard O, Coquery M, Mons R, Abbaci K, Giamberini L & Garric J (2011) Comprehensive biological effects of a complex field poly-metallic pollution gradient on the New Zealand mudsnail Potamopyrgus antipodarum (Gray). Aquatic Toxicology, 101(1):100-108.

Gust M, Mouthon J, Queau H, Dussart C, Buronfosse T & Garric J (2011) Natural variability and response interpretation of fecundity, vertebrate-like sex-steroid levels and energy status in the New Zealand mudsnail Potamopyrgus antipodarum (Gray). General and Comparative Endocrinology, 172(2):243-250.

Lacaze E, Devaux A, Jubeaux G, Mons R, Gardette M, Bony S, Garric J & Geffard O (2011) DNA damage in Gammarus fossarum sperm as a biomarker of genotoxic pressure: Intrinsic variability and reference level. Science of the Total Environment, 409(17):3230-3236.

Lacaze E, Devaux A, Mons R, Bony S, Garric J, Geffard A & Geffard O (2011) DNA damage in caged Gammarus fossarum amphipods: A tool for freshwater genotoxicity assessment. Environmental Pollution, 159(6):1682-1691.

Lacaze E, Geffard O, Goyet D, Bony S & Devaux A (2011) Linking genotoxic responses in Gammarus fossarum germ cells with reproduction impairment, using the Comet assay. Environmental Research, 111(5):626-634.

Lopes C, Perga ME, Peretti A, Roger MC, Persat H & Babut M (2011) Is PCBs concentration variability between and within freshwater fish species explained by their contamination pathways? Chemosphere, 85(3):502-508.

Xuereb B, Bezin L, Chaumot A, Budzinski H, Augagneur S, Tutundjian R, Garric J & Geffard O (2011) Vitellogenin-like gene expression in freshwater amphipod Gammarus fossarum (Koch, 1835): Functional characterization in females and potential for use as an endocrine disruption biomarker in males. Ecotoxicology, 20(6):1286-1299.

 

2010

 

Archaimbault V, Usseglio-Polatera P, Garric J, Wasson JG & Babut M (2010) Assessing pollution of toxic sediment in streams using bio-ecological traits of benthic macroinvertebrates. Freshwater Biology, 55(7):1430-1446.

Desrosiers M, Babut MP, Pelletier M, B́langer C, Thibodeau S & Martelz L (2010) Efficiency of sediment quality guidelines for predicting toxicity: the case of the St. Lawrence River. Integrated Environmental Assessment and Management, 6(2):225-239.

Ducrot V, Billoir E, Péry ARR, Garric J & Charles S (2010) From individual to population level effects of toxicants in the tubicifid branchiura sowerbyi using threshold effect models in a bayesian framework. Environmental Science and Technology, 44(9):3566-3571.

Gagnaire B, Geffard O, Noury P & Garric J (2010) In vivo indirect measurement of cytochrome P450-associated activities in freshwater gastropod molluscs. Environmental Toxicology, 25(6):545-553.

Geffard A, Sartelet H, Garric J, Biagianti-Risbourg S, Delahaut L & Geffard O (2010) Subcellular compartmentalization of cadmium, nickel, and lead in Gammarus fossarum: Comparison of methods. Chemosphere, 78(7):822-829.

Geffard O, Xuereb B, Chaumot A, Geffard A, Biagianti S, Noël C, Abbaci K, Garric J, Charmantier G & Charmantier-Daures M (2010) Ovarian cycle and embryonic development in Gammarus fossarum: Application for reproductive toxicity assessment. Environmental Toxicology and Chemistry, 29(10):2249-2259.

Gust M, Buronfosse T, Geffard O, Mons R, Queau H, Mouthon J & Garric J (2010) In situ biomonitoring of freshwater quality using the New Zealand mudsnail Potamopyrgus antipodarum (Gray) exposed to waste water treatment plant (WWTP) effluent discharges. Water Research, 44(15):4517-4528.

Gust M, Garric J, Giamberini L, Mons R, Abbaci K, Garnier F & Buronfosse T (2010) Sensitivity of New Zealand mudsnail Potamopyrgus antipodarum (Gray) to a specific aromatase inhibitor. Chemosphere, 79(1):47-53.

Gust M, Vulliet E, Giroud B, Garnier F, Couturier S, Garric J & Buronfosse T (2010) Development, validation and comparison of LC-MS/MS and RIA methods for quantification of vertebrates-like sex-steroids in prosobranch molluscs. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences, 878(19):1487-1492.

Issartel J, Boulo V, Wallon S, Geffard O & Charmantier G (2010) Cellular and molecular osmoregulatory responses to cadmium exposure in Gammarus fossarum (Crustacea, Amphipoda). Chemosphere, 81(6):701-710.

Küster A, Alder AC, Escher BI, Duis K, Fenner K, Garric J, Hutchinson TH, Lapen DR, Péry A, Römbke J, Snape J, Ternes T, Topp E, Wehrhan A & Knackerk T (2010) Environmental risk assessment of human pharmaceuticals in the European union: A case study with the β-blocker atenolol. Integrated Environmental Assessment and Management, 6(SUPPL. 1):514-523.

Lacaze E, Geffard O, Bony S & Devaux A (2010) Genotoxicity assessment in the amphipod Gammarus fossarum by use of the alkaline Comet assay. Mutation Research - Genetic Toxicology and Environmental Mutagenesis, 700(1-2):32-38.

Liebig M, Fernandez AA, Blübaum-Gronau E, Boxall A, Brinke M, Carbonell G, Egeler H, Fenner K, Fernandez C, Fink G, Garric J, Halling-Sørensen B, Knacker T, Krogh KA, Küster A, Dirk L, Cots MAP, Pope L, Prasse C, Römbke J, Rönnefahrt I, Schneider MK, Schweitzer N, Tarazona JV, Ternes TA, Traunspurger W, Wehrhan A & Duisy K (2010) Environmental risk assessment of ivermectin: A case study. Integrated Environmental Assessment and Management, 6(SUPPL. 1):567-587.

Oakes KD, Coors A, Escher BI, Fenner K, Garric J, Gust M, Knacker T, Küster A, Kussatz C, Metcalfe CD, Monteiro S, Moon TW, Mennigen JA, Parrott J, Péry ARR, Ramil M, Roennefahrt I, Tarazona JV, Sánchez-Argüello P, Ternes TA, Trudeau VL, Boucard T, Van Der Kraak GJ & Servos MR (2010) Environmental risk assessment for the serotonin re uptake inhibitor fluoxetine: Case study using the european risk assessment framework. Integrated Environmental Assessment and Management, 6(SUPPL. 1):524-539.

Schmitt H, Boucard T, Garric J, Jensen J, Parrott J, Péry A, Römbke J, Straub JO, Hutchinson TH, Sánchez-Argüello P, Wennmalm A & Duisyy K (2010) Recommendations on the environmental risk assessment of pharmaceuticals: Effect characterization. Integrated Environmental Assessment and Management, 6(SUPPL. 1):588-602.

Simon R, Jubeaux G, Chaumot A, Lemoine J, Geffard O & Salvador A (2010) Mass spectrometry assay as an alternative to the enzyme-linked immunosorbent assay test for biomarker quantitation in ecotoxicology: Application to vitellogenin in Crustacea (Gammarus fossarum). Journal of Chromatography A, 1217(31):5109-5115.

 

2009

 

Babut M, Miege C, Villeneuve B, Abarnou A, Duchemin J, Marchand P & Narbonne JF (2009) Correlations between dioxin-like and indicators PCBs: Potential consequences for environmental studies involving fish or sediment. Environmental Pollution, 157(12):3451-3456.

Besse JP & Garric J (2009) Progestagens for human use, exposure and hazard assessment for the aquatic environment. Environmental Pollution, 157(12):3485-3494.

Bouleau G, Argillier C, Souchon Y, Barthélémy C & Babut M (2009) How ecological indicators construction reveals social changes-The case of lakes and rivers in France. Ecological Indicators, 9(6):1198-1205.

Bunescu A, Garric J, Vollat B, Canet-Soulas E, Graveron-Demilly D & Fauvelle F (2009) In vivo proton HR-MAS NMR metabolic profile of the freshwater cladoceran Daphnia magna. Molecular BioSystems, 6(1):121-125.

Chaumot A, Gos P, Garric J & Geffard O (2009) Additive vs non-additive genetic components in lethal cadmium tolerance of Gammarus (Crustacea): Novel light on the assessment of the potential for adaptation to contamination.  Aquatic Toxicology,94(4):294-299.

Dedourge-Geffard O, Palais F, Biagianti-Risbourg S, Geffard O & Geffard A (2009) Effects of metals on feeding rate and digestive enzymes in Gammarus fossarum: An in situ experiment. Chemosphere, 77(11):1569-1576.

Gagnaire B, Gagné F, André C, Blaise C, Abbaci K, Budzinski H, Dévier MH & Garric J (2009) Development of biomarkers of stress related to endocrine disruption in gastropods: Alkali-labile phosphates, protein-bound lipids and vitellogenin-like proteins. Aquatic Toxicology, 92(3):155-167.

Gust M, Buronfosse T, Giamberini L, Ramil M, Mons R & Garric J (2009) Effects of fluoxetine on the reproduction of two prosobranch mollusks: Potamopyrgus antipodarum and Valvata piscinalis. Environmental Pollution, 157(2):423-429.

Iwema T, Chaumot A, Studer RA, Robinson-Rechavi M, Billas IML, Moras D, Laudet V & Bonneton F (2009) Structural and evolutionary innovation of the heterodimerization interface between USP and the ecdysone receptor ECR in insects. Molecular Biology and Evolution, 26(4):753-768.

Lopes C, Charles S, Vollat B & Garric J (2009) Toxicity of ivermectin on cladocerans: Comparison of toxic effects on Daphnia and Ceriodaphnia species. Environmental Toxicology and Chemistry, 28(10):2160-2166.

Pellet B, Geffard O, Lacour C, Kermoal T, Gourlay-FrancÉ C & Tusseau-Vuillemin MH (2009) A model predicting waterborne cadmium bioaccumulation in gammarus pulex: the effects of dissolved organic ligands, calcium, and temperature. Environmental Toxicology and Chemistry, 28(11):2434-2442.

Xuereb B, Chaumot A, Mons R, Garric J & Geffard O (2009) Acetylcholinesterase activity in Gammarus fossarum (Crustacea Amphipoda). Intrinsic variability, reference levels, and a reliable tool for field surveys. Aquatic Toxicology, 93(4):225-233.

Xuereb B, Lefèvre E, Garric J & Geffard O (2009) Acetylcholinesterase activity in Gammarus fossarum (Crustacea Amphipoda): Linking AChE inhibition and behavioural alteration. Aquatic Toxicology, 94(2):114-122.